Nowledge, this genome-wide assembly and annotation MicroRNA Activator Source information represent the very first genomescale
Nowledge, this genome-wide assembly and annotation data represent the first genomescale assembly of this species. Even though the relevant info was incomplete, the analysis with the N. aurantialba genome within this study fills the gap in genomic information and facts on N. aurantialba and can lay a theoretical foundation for future investigation around the biosynthesis of active compounds, promoting the application of N. aurantialba in the field of drug research and functional food improvement.Supplementary Components: The following are readily available on the internet at mdpi.com/article/ 10.3390/jof8010006/s1, Figure S1: Summarizes of the annotations of N. aurantialba; Figure S2: The KOG function classification of proteins in N. aurantialba; Figure S3: Comparative genomics evaluation of KOG annotations; Figure S4: The GO function annotation of N. aurantialba; Figure S5: The KEGG function annotation of N. aurantialba; Figure S6: Terpenoid biosynthesis pathway of N. aurantialba; Figure S7: Amino sugar and nucleotide sugar metabolic pathway in N. aurantialba; Figure S8: Putative nucleoside sugar biosynthetic pathway of N. aurantialba; Table S1: Basidiomycetes and the origin of their genomes used within the study; Table S2: Comparative genomics analysis of Repeat sequence and Noncoding RNA; Table S3: Summarizes of the annotations of Naematelia aurantialba; Table S4: Comparative genomics analysis of KOG, GO, and KEGG annotations; Table S5: Distribution of CAZyme in Naematelia aurantialba along with the other 18 basidiomycetes; Table S6: P450 genes and subfamilies in Naematelia aurantialba; Table S7: The putative enzyme-coding genes involved in biosynthesis of secondary metabolites; Table S8: The putative genes involved in secondary metabolism of Naematelia aurantialba; Table S9: The putative genes involved in polysaccharides biosynthesis of Naematelia aurantialba; Table S10: Putative genes involved in ABC-dependent pathways; Table S11: The putative genes involved in biosynthesis of bioactive proteins, vitamins B, amino acids, and unsaturated fatty acids of Naematelia aurantialba. Author Contributions: Conceptualization, P.L. and H.X.; methodology, P.L.; application, R.W. and Y.Q.; validation, D.S.; formal analysis, T.S. and S.W.; investigation, H.J.; resources, P.L.; information curation, T.S.; writing–original draft preparation, T.S. and Y.Z.; writing–review and editing, T.S. and K.Y.; visualization, S.L.; supervision, P.L.; project administration, P.L. and H.X. All authors have read and agreed towards the published version from the manuscript. Funding: The analysis was funded by National Key Analysis and Development Program of China (2021YFC2101700), the National Natural Science Foundation of China (31800101), China Postdoctoral Science Foundation (2020M671468), State Nav1.7 drug Important Laboratory Open Foundation (ZK201905), and National Students’ platform for innovation and entrepreneurship training plan (202110291042Z). Institutional Evaluation Board Statement: Not applicable. Informed Consent Statement: Not applicable. Data Availability Statement: Genome sequencing of N. aurantialba-20 generated for this study happen to be submitted towards the NCBI (ncbi.nlm.nih.gov, accessed on: 1 November 2021). BioProject: PRJNA772294 and BioSample: SAMN22141859.J. Fungi 2022, eight,15 ofAcknowledgments: We thank the U.S. Department of Energy Joint Genome Institute (http://www. jgi.doe.gov/, accessed on: two September 2021) in collaboration with all the user neighborhood and the National Center for Biotechnology Information (ncbi.nlm.nih.gov/geno.